Dynamic Model of Cell Differentiation

Based on dynamical systems modeling and simulations, a novel theory for stem cell differentiation is proposed.

Metabolic Flux Analysis by Genome-scale Models

genome_scale_model

Metabolic flux profiles were estimated by genome-scale metabolic models for improvements of bio- production.

Experimental Evolution of Bacteria

artificial evolution

Comprehensive phenotype/genotype Analysis were performed for evolved E.coli strains.

Development of Algorithms for Microarrays

microarrayy

Based on physio-chemical model of hybridization, novel algorithms of microarray analysis were proposed.

Adaptive dynamics Driven by Fluctuations

cell_model

By using simulations of cell models, a fluctuation-based adaptive behavior was studied.

Universal Statistics in Intra-Cellular Dynamics

Zipf_law

Using cell model, universal statistics in cellular dynamics and their experimental verifications were studied.

Microarray-based Molecular Breedings

clustering

By using comprehensive analysis as microarrays, information for molecular breeding were extracted.

Comprehensive Phenotypic Analysis of Yeast

96well

Effects of single gene deletion/overexpression on cell growth were quantified under stress conditions.

Analysis of Fluctuation in Gene Expression

fluctuation2

By using continuous culture of E.coli cells, features of fluctuation in gene expression were analyzed.

Metabolomics-data based Flux Analysis

jar

Metabolic flux profiles were quantified by using 13C-tracer experiments and GC-MS analysis.